J4_9UZL_003
3D structure
- PDB id
- 9UZL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- EMCV IRES captured on mammalian 40S ribosome with initiator tRNA and eIF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.01 Å
Loop
- Sequence
- GUGGCG*CGUGC*GAGGUCG*CC
- Length
- 20 nucleotides
- Bulged bases
- 9UZL|1|y|U|8, 9UZL|1|y|U|46, 9UZL|1|y|C|47
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9UZL|1|y|G|7
9UZL|1|y|U|8
9UZL|1|y|G|9
9UZL|1|y|G|10
9UZL|1|y|C|11
9UZL|1|y|G|12
*
9UZL|1|y|C|22
9UZL|1|y|G|23
9UZL|1|y|U|24
9UZL|1|y|G|25
9UZL|1|y|C|26
*
9UZL|1|y|G|42
9UZL|1|y|A|43
9UZL|1|y|G|44
9UZL|1|y|G|45
9UZL|1|y|U|46
9UZL|1|y|C|47
9UZL|1|y|G|48
*
9UZL|1|y|C|64
9UZL|1|y|C|65
Current chains
- Chain y
- Initiator tRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain A
- Eukaryotic translation initiation factor 2 subunit 1
- Chain U
- Small ribosomal subunit protein uS13
- Chain z
- Encephalomyocarditis viral IRES
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