J4_9UZL_004

3D structure

PDB id

9UZL (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S ribosome with initiator tRNA and eIF2

Experimental method

ELECTRON MICROSCOPY

Resolution

5.01 Å

Loop

Sequence

AGG*CGG*CCACG*CCU

Length

14 nucleotides

Bulged bases

9UZL|1|z|C|576

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9UZL|1|z|A|525
9UZL|1|z|G|526
9UZL|1|z|G|527
*
9UZL|1|z|C|563
9UZL|1|z|G|564
9UZL|1|z|G|565
*
9UZL|1|z|C|573
9UZL|1|z|C|574
9UZL|1|z|A|575
9UZL|1|z|C|576
9UZL|1|z|G|577
*
9UZL|1|z|C|591
9UZL|1|z|C|592
9UZL|1|z|U|593

Current chains

Chain z

Encephalomyocarditis viral IRES

Nearby chains

Chain R

Small ribosomal subunit protein uS19

Chain U

Small ribosomal subunit protein uS13