J4_9VMA_001

3D structure

PDB id

9VMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

a protein complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

UUCUA*UCUU*ACGGGG*CAACCAAGUGGUAACUUACUUUUACUUG

Length

43 nucleotides

Bulged bases

9VMA|1|G|U|33, 9VMA|1|G|G|81, 9VMA|1|G|A|111, 9VMA|1|G|U|121, 9VMA|1|G|U|126, 9VMA|1|G|U|131

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9VMA|1|G|U|30
9VMA|1|G|U|31
9VMA|1|G|C|32
9VMA|1|G|U|33
9VMA|1|G|A|34
*
9VMA|1|G|U|53
9VMA|1|G|C|54
9VMA|1|G|U|55
9VMA|1|G|U|56
*
9VMA|1|G|A|79
9VMA|1|G|C|80
9VMA|1|G|G|81
9VMA|1|G|G|82
9VMA|1|G|G|83
9VMA|1|G|G|84
*
9VMA|1|G|C|105
9VMA|1|G|A|106
9VMA|1|G|A|107
9VMA|1|G|C|108
9VMA|1|G|C|109
9VMA|1|G|A|110
9VMA|1|G|A|111
9VMA|1|G|G|112
9VMA|1|G|U|113
9VMA|1|G|G|114
9VMA|1|G|G|115
9VMA|1|G|U|116
9VMA|1|G|A|117
9VMA|1|G|A|118
9VMA|1|G|C|119
9VMA|1|G|U|120
9VMA|1|G|U|121
9VMA|1|G|A|122
9VMA|1|G|C|123
9VMA|1|G|U|124
9VMA|1|G|U|125
9VMA|1|G|U|126
9VMA|1|G|U|127
9VMA|1|G|A|128
9VMA|1|G|C|129
9VMA|1|G|U|130
9VMA|1|G|U|131
9VMA|1|G|G|132

Current chains

Chain G

RNA (188-MER)

Nearby chains

Chain A

RNA-dependent DNA polymerase

Chain B

RNA-dependent DNA polymerase

Chain K

RNA (188-MER)

Chain M

DNA (5'-D(P*AP*AP*AP*A)-3')