J4_9VTH_003

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CC*GAGUCG*CAAAUCG*CAAG

Length

19 nucleotides

Bulged bases

9VTH|1|14|C|295

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9VTH_003 not in the Motif Atlas

Homologous match to J4_9H3G_001

Geometric discrepancy: 0.0898

The information below is about J4_9H3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.4

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

12

Unit IDs

9VTH|1|14|C|110
9VTH|1|14|C|111
*
9VTH|1|14|G|264
9VTH|1|14|A|265
9VTH|1|14|G|266
9VTH|1|14|U|267
9VTH|1|14|C|268
9VTH|1|14|G|269
*
9VTH|1|14|C|290
9VTH|1|14|A|291
9VTH|1|14|A|292
9VTH|1|14|A|293
9VTH|1|14|U|294
9VTH|1|14|C|295
9VTH|1|14|G|296
*
9VTH|1|14|C|313
9VTH|1|14|A|314
9VTH|1|14|A|315
9VTH|1|14|G|316

Current chains

Chain 14

25S rRNA

Nearby chains

Chain LO

60S ribosomal protein L35-like

Chain LS

60S ribosomal protein L13

Chain LU

Ribosomal protein L15

Chain Lj

60S ribosomal protein L36