J4_9VTH_004

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CAAG*CGCC*GAG*CGUUG

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9VTH|1|14|C|183
9VTH|1|14|A|184
9VTH|1|14|A|185
9VTH|1|14|G|186
*
9VTH|1|14|C|202
9VTH|1|14|G|203
9VTH|1|14|C|204
9VTH|1|14|C|205
*
9VTH|1|14|G|209
9VTH|1|14|A|210
9VTH|1|14|G|211
*
9VTH|1|14|C|223
9VTH|1|14|G|224
9VTH|1|14|U|225
9VTH|1|14|U|226
9VTH|1|14|G|227

Current chains

Chain 14

25S rRNA

Nearby chains

Chain LD

60S ribosomal protein L4-like

Chain LN

60S ribosomal protein L26-1