J4_9VVI_006

3D structure

PDB id

9VVI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SecM-arrested 70S ribosome with YheS

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9VVI|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9VVI_006 not in the Motif Atlas

Homologous match to J4_7A0S_001

Geometric discrepancy: 0.2488

The information below is about J4_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.3

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

9VVI|1|a|C|268
9VVI|1|a|C|269
*
9VVI|1|a|G|370
9VVI|1|a|A|371
9VVI|1|a|G|372
9VVI|1|a|U|373
9VVI|1|a|A|374
9VVI|1|a|G|375
*
9VVI|1|a|U|399
9VVI|1|a|G|400
9VVI|1|a|A|401
9VVI|1|a|A|402
9VVI|1|a|U|403
9VVI|1|a|A|404
9VVI|1|a|U|405
9VVI|1|a|G|406
*
9VVI|1|a|C|421
9VVI|1|a|A|422
9VVI|1|a|A|423
9VVI|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L9

Chain w

Large ribosomal subunit protein bL28