J4_9VVI_007
3D structure
- PDB id
- 9VVI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SecM-arrested 70S ribosome with YheS
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- GGAAG*CGCG*CAG*CGUAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9VVI_007 not in the Motif Atlas
- Homologous match to J4_7A0S_002
- Geometric discrepancy: 0.0995
- The information below is about J4_7A0S_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_16174.1
- Basepair signature
- cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
9VVI|1|a|G|297
9VVI|1|a|G|298
9VVI|1|a|A|299
9VVI|1|a|A|300
9VVI|1|a|G|301
*
9VVI|1|a|C|316
9VVI|1|a|G|317
9VVI|1|a|C|318
9VVI|1|a|G|319
*
9VVI|1|a|C|323
9VVI|1|a|A|324
9VVI|1|a|G|325
*
9VVI|1|a|C|337
9VVI|1|a|G|338
9VVI|1|a|U|339
9VVI|1|a|A|340
9VVI|1|a|C|341
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain e
- 50S ribosomal protein L4
- Chain t
- 50S ribosomal protein L24
Coloring options: