J4_9VVI_008

3D structure

PDB id

9VVI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SecM-arrested 70S ribosome with YheS

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

9VVI|1|a|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9VVI|1|a|C|601
9VVI|1|a|A|602
9VVI|1|a|A|603
9VVI|1|a|G|604
*
9VVI|1|a|C|624
9VVI|1|a|G|625
9VVI|1|a|A|626
9VVI|1|a|A|627
9VVI|1|a|G|628
*
9VVI|1|a|C|635
9VVI|1|a|G|636
9VVI|1|a|A|637
9VVI|1|a|G|638
*
9VVI|1|a|C|650
9VVI|1|a|G|651
9VVI|1|a|U|652
9VVI|1|a|U|653
9VVI|1|a|A|654
9VVI|1|a|A|655
9VVI|1|a|G|656

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL35

Chain e

50S ribosomal protein L4

Chain k

50S ribosomal protein L15