J4_9VXM_010
3D structure
- PDB id
- 9VXM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AUAG*CAU*AAGAUG*CU
- Length
- 15 nucleotides
- Bulged bases
- 9VXM|1|Ax|U|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9VXM_010 not in the Motif Atlas
- Homologous match to J4_1IL2_001
- Geometric discrepancy: 0.2
- The information below is about J4_1IL2_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.2
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 49
Unit IDs
9VXM|1|Ax|A|7
9VXM|1|Ax|U|8
9VXM|1|Ax|A|9
9VXM|1|Ax|G|10
*
9VXM|1|Ax|C|25
9VXM|1|Ax|A|26
9VXM|1|Ax|U|27
*
9VXM|1|Ax|A|43
9VXM|1|Ax|A|44
9VXM|1|Ax|G|45
9VXM|1|Ax|A|46
9VXM|1|Ax|U|48
9VXM|1|Ax|G|49
*
9VXM|1|Ax|C|65
9VXM|1|Ax|U|66
Current chains
- Chain Ax
- P/P-tRNA
Nearby chains
- Chain 8
- Large ribosomal subunit protein mL40
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: