J4_9W0N_004
3D structure
- PDB id
- 9W0N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GGUUC*GGUGAG*CU*AAUCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 9W0N|1|1|G|1341
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9W0N_004 not in the Motif Atlas
- Homologous match to J4_8B0X_008
- Geometric discrepancy: 0.117
- The information below is about J4_8B0X_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_77353.2
- Basepair signature
- cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 9
Unit IDs
9W0N|1|1|G|1310
9W0N|1|1|G|1311
9W0N|1|1|U|1312
9W0N|1|1|U|1313
9W0N|1|1|C|1314
*
9W0N|1|1|G|1338
9W0N|1|1|G|1339
9W0N|1|1|U|1340
9W0N|1|1|G|1341
9W0N|1|1|A|1342
9W0N|1|1|G|1343
*
9W0N|1|1|C|1404
9W0N|1|1|U|1405
*
9W0N|1|1|A|1597
9W0N|1|1|A|1598
9W0N|1|1|U|1599
9W0N|1|1|C|1600
9W0N|1|1|G|1601
9W0N|1|1|U|1602
9W0N|1|1|A|1603
9W0N|1|1|C|1604
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain D
- Large ribosomal subunit protein bL34
- Chain t
- Large ribosomal subunit protein uL23
Coloring options: