J4_9WNQ_002

3D structure

PDB id

9WNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GAG*CAUAACG*CCAAAGAGGG*CUCUUGC

Length

27 nucleotides

Bulged bases

9WNQ|1|A|C|183, 9WNQ|1|A|A|197, 9WNQ|1|A|U|218

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9WNQ|1|A|G|142
9WNQ|1|A|A|143
9WNQ|1|A|G|144
*
9WNQ|1|A|C|178
9WNQ|1|A|A|179
9WNQ|1|A|U|180
9WNQ|1|A|A|181
9WNQ|1|A|A|182
9WNQ|1|A|C|183
9WNQ|1|A|G|184
*
9WNQ|1|A|C|193
9WNQ|1|A|C|194
9WNQ|1|A|A|195
9WNQ|1|A|A|196
9WNQ|1|A|A|197
9WNQ|1|A|G|198
9WNQ|1|A|A|199
9WNQ|1|A|G|200
9WNQ|1|A|G|201
9WNQ|1|A|G|202
*
9WNQ|1|A|C|215
9WNQ|1|A|U|216
9WNQ|1|A|C|217
9WNQ|1|A|U|218
9WNQ|1|A|U|219
9WNQ|1|A|G|220
9WNQ|1|A|C|221

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

30S ribosomal protein S20