J4_9WNQ_004

3D structure

PDB id

9WNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GGGAAUAG*CAC*GGGGUCG*UUUCCC

Length

24 nucleotides

Bulged bases

9WNQ|1|X|U|8, 9WNQ|1|X|U|47, 9WNQ|1|X|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9WNQ|1|X|G|3
9WNQ|1|X|G|4
9WNQ|1|X|G|5
9WNQ|1|X|A|6
9WNQ|1|X|A|7
9WNQ|1|X|U|8
9WNQ|1|X|A|9
9WNQ|1|X|G|10
*
9WNQ|1|X|C|25
9WNQ|1|X|A|26
9WNQ|1|X|C|27
*
9WNQ|1|X|G|43
9WNQ|1|X|G|44
9WNQ|1|X|G|45
9WNQ|1|X|G|46
9WNQ|1|X|U|47
9WNQ|1|X|C|48
9WNQ|1|X|G|49
*
9WNQ|1|X|U|65
9WNQ|1|X|U|66
9WNQ|1|X|U|67
9WNQ|1|X|C|68
9WNQ|1|X|C|69
9WNQ|1|X|C|70

Current chains

Chain X

E-site tRNA

Nearby chains

Chain 5

Large ribosomal subunit protein bL33

Chain b

Large subunit ribosomal RNA; LSU rRNA