J4_9WNQ_005
3D structure
- PDB id
- 9WNQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome in complex with an engineered arrest peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- UGAUUGG*CAC*GGGGUCGGAG*CUCUAUCA
- Length
- 28 nucleotides
- Bulged bases
- 9WNQ|1|Y|U|8, 9WNQ|1|Y|U|48, 9WNQ|1|Y|C|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9WNQ|1|Y|U|4
9WNQ|1|Y|G|5
9WNQ|1|Y|A|6
9WNQ|1|Y|U|7
9WNQ|1|Y|U|8
9WNQ|1|Y|G|9
9WNQ|1|Y|G|10
*
9WNQ|1|Y|C|26
9WNQ|1|Y|A|27
9WNQ|1|Y|C|28
*
9WNQ|1|Y|G|44
9WNQ|1|Y|G|45
9WNQ|1|Y|G|46
9WNQ|1|Y|G|47
9WNQ|1|Y|U|48
9WNQ|1|Y|C|49
9WNQ|1|Y|G|50
9WNQ|1|Y|G|51
9WNQ|1|Y|A|52
9WNQ|1|Y|G|53
*
9WNQ|1|Y|C|63
9WNQ|1|Y|U|64
9WNQ|1|Y|C|65
9WNQ|1|Y|U|66
9WNQ|1|Y|A|67
9WNQ|1|Y|U|68
9WNQ|1|Y|C|69
9WNQ|1|Y|A|70
Current chains
- Chain Y
- A-tRNA(PRO),P-tRNA(PRO)
Nearby chains
- Chain M
- 30S ribosomal protein S13
- Chain Z
- Transfer RNA; tRNA
- Chain b
- Large subunit ribosomal RNA; LSU rRNA
- Chain n
- 50S ribosomal protein L16
- Chain y
- Large ribosomal subunit protein bL27
Coloring options: