J4_9WNR_001

3D structure

PDB id

9WNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

9WNR|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9WNR_001 not in the Motif Atlas

Homologous match to J4_6CZR_027

Geometric discrepancy: 0.4909

The information below is about J4_6CZR_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.2

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

9WNR|1|A|G|115
9WNR|1|A|A|116
9WNR|1|A|G|117
9WNR|1|A|U|118
9WNR|1|A|A|119
9WNR|1|A|A|120
9WNR|1|A|U|121
9WNR|1|A|G|122
*
9WNR|1|A|U|239
9WNR|1|A|G|240
*
9WNR|1|A|C|286
9WNR|1|A|U|287
9WNR|1|A|A|288
9WNR|1|A|G|289
*
9WNR|1|A|C|311
9WNR|1|A|C|312

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17