J4_9WNR_005
3D structure
- PDB id
- 9WNR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.76 Å
Loop
- Sequence
- GAUUGG*CAC*GGGGUCG*UAUC
- Length
- 20 nucleotides
- Bulged bases
- 9WNR|1|Y|U|8, 9WNR|1|Y|U|48, 9WNR|1|Y|C|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9WNR_005 not in the Motif Atlas
- Homologous match to J4_6GSK_031
- Geometric discrepancy: 0.5404
- The information below is about J4_6GSK_031
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_13620.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-cHS-F-F-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
9WNR|1|Y|G|5
9WNR|1|Y|A|6
9WNR|1|Y|U|7
9WNR|1|Y|U|8
9WNR|1|Y|G|9
9WNR|1|Y|G|10
*
9WNR|1|Y|C|26
9WNR|1|Y|A|27
9WNR|1|Y|C|28
*
9WNR|1|Y|G|44
9WNR|1|Y|G|45
9WNR|1|Y|G|46
9WNR|1|Y|G|47
9WNR|1|Y|U|48
9WNR|1|Y|C|49
9WNR|1|Y|G|50
*
9WNR|1|Y|U|66
9WNR|1|Y|A|67
9WNR|1|Y|U|68
9WNR|1|Y|C|69
Current chains
- Chain Y
- P-tRNA(PRO), A-tRNA(PRO)
Nearby chains
- Chain M
- 30S ribosomal protein S13
- Chain Z
- Transfer RNA; tRNA
- Chain b
- Large subunit ribosomal RNA; LSU rRNA
- Chain n
- 50S ribosomal protein L16
Coloring options: