J4_9WNR_008

3D structure

PDB id

9WNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9WNR_008 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.125

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

9WNR|1|b|G|297
9WNR|1|b|G|298
9WNR|1|b|A|299
9WNR|1|b|A|300
9WNR|1|b|G|301
*
9WNR|1|b|C|316
9WNR|1|b|G|317
9WNR|1|b|C|318
9WNR|1|b|G|319
*
9WNR|1|b|C|323
9WNR|1|b|A|324
9WNR|1|b|G|325
*
9WNR|1|b|C|337
9WNR|1|b|G|338
9WNR|1|b|U|339
9WNR|1|b|A|340
9WNR|1|b|C|341

Current chains

Chain b

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain v

50S ribosomal protein L24