J4_9WW4_004
3D structure
- PDB id
- 9WW4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome non-rotated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.48 Å
Loop
- Sequence
- (OMC)AAAUAU*AGG*(OMC)AUGUU*AG
- Length
- 18 nucleotides
- Bulged bases
- 9WW4|1|AA|A|2366, 9WW4|1|AA|U|2369, 9WW4|1|AA|U|2828
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9WW4_004 not in the Motif Atlas
- Homologous match to J4_8GLP_004
- Geometric discrepancy: 0.0484
- The information below is about J4_8GLP_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9WW4|1|AA|OMC|2365
9WW4|1|AA|A|2366
9WW4|1|AA|A|2367
9WW4|1|AA|A|2368
9WW4|1|AA|U|2369
9WW4|1|AA|A|2370
9WW4|1|AA|U|2371
*
9WW4|1|AA|A|2389
9WW4|1|AA|G|2390
9WW4|1|AA|G|2391
*
9WW4|1|AA|OMC|2824
9WW4|1|AA|A|2825
9WW4|1|AA|U|2826
9WW4|1|AA|G|2827
9WW4|1|AA|U|2828
9WW4|1|AA|U|2829
*
9WW4|1|AA|A|3856
9WW4|1|AA|G|3857
Current chains
- Chain AA
- 28S rRNA (3773-MER)
Nearby chains
- Chain AR
- 60S ribosomal protein L17
- Chain AT
- 60S ribosomal protein L19
- Chain Af
- 60S ribosomal protein L31
Coloring options: