J4_9WW4_009

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAA(UY1)G

Length

21 nucleotides

Bulged bases

9WW4|1|AA|UY1|3818

QA status

Modified nucleotides: UY1

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9WW4_009 not in the Motif Atlas

Homologous match to J4_8GLP_010

Geometric discrepancy: 0.0492

The information below is about J4_8GLP_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_21738.2

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tSW-F-cSH-F-F

Number of instances in this motif group

3

Unit IDs

9WW4|1|AA|C|3696
9WW4|1|AA|U|3697
9WW4|1|AA|G|3698
*
9WW4|1|AA|C|3752
9WW4|1|AA|G|3753
*
9WW4|1|AA|C|3771
9WW4|1|AA|U|3772
9WW4|1|AA|U|3773
9WW4|1|AA|A|3774
9WW4|1|AA|A|3775
9WW4|1|AA|G|3776
9WW4|1|AA|G|3777
9WW4|1|AA|U|3778
9WW4|1|AA|A|3779
9WW4|1|AA|G|3780
*
9WW4|1|AA|U|3814
9WW4|1|AA|G|3815
9WW4|1|AA|A|3816
9WW4|1|AA|A|3817
9WW4|1|AA|UY1|3818
9WW4|1|AA|G|3819

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AD

60S ribosomal protein L8

Chain Ap

60S ribosomal protein L41

Chain BA

Small subunit ribosomal RNA; SSU rRNA