J4_9WW4_011

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CUAAG*UUGA(PSU)*ACC*GGG

Length

16 nucleotides

Bulged bases

9WW4|1|AA|A|4234

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9WW4_011 not in the Motif Atlas

Homologous match to J4_8GLP_012

Geometric discrepancy: 0.1449

The information below is about J4_8GLP_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_59590.4

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9WW4|1|AA|C|4231
9WW4|1|AA|U|4232
9WW4|1|AA|A|4233
9WW4|1|AA|A|4234
9WW4|1|AA|G|4235
*
9WW4|1|AA|U|4289
9WW4|1|AA|U|4290
9WW4|1|AA|G|4291
9WW4|1|AA|A|4292
9WW4|1|AA|PSU|4293
*
9WW4|1|AA|A|4317
9WW4|1|AA|C|4318
9WW4|1|AA|C|4319
*
9WW4|1|AA|G|4328
9WW4|1|AA|G|4329
9WW4|1|AA|G|4330

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AG

Large ribosomal subunit protein uL18

Chain AV

60S ribosomal protein L21

Chain Ad

60S ribosomal protein L29

Chain Aq

60S ribosomal protein L36a