J4_9WW4_012

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GUA(A2M)*(OMU)C*GUG*CGCC

Length

13 nucleotides

Bulged bases

9WW4|1|AA|U|4677

QA status

Modified nucleotides: A2M, OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9WW4_012 not in the Motif Atlas

Homologous match to J4_8GLP_013

Geometric discrepancy: 0.0615

The information below is about J4_8GLP_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69783.1

Basepair signature

cWW-F-F-F-F-cWW-cWW-cWW

Number of instances in this motif group

2

Unit IDs

9WW4|1|AA|G|4587
9WW4|1|AA|U|4588
9WW4|1|AA|A|4589
9WW4|1|AA|A2M|4590
*
9WW4|1|AA|OMU|4620
9WW4|1|AA|C|4621
*
9WW4|1|AA|G|4676
9WW4|1|AA|U|4677
9WW4|1|AA|G|4678
*
9WW4|1|AA|C|4712
9WW4|1|AA|G|4713
9WW4|1|AA|C|4714
9WW4|1|AA|C|4715

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AE

Large ribosomal subunit protein uL3

Chain AQ

60S ribosomal protein L13a

Chain AX

60S ribosomal protein L23