J4_9WW4_013

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

C(A2M)(PSU)UAAA(PSU)C*GCC*G(PSU)GAC*GG

Length

19 nucleotides

Bulged bases

9WW4|1|BA|G|407

QA status

Modified nucleotides: A2M, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9WW4_013 not in the Motif Atlas

Homologous match to J4_9H3G_013

Geometric discrepancy: 0.1227

The information below is about J4_9H3G_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_15241.5

Basepair signature

cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW

Number of instances in this motif group

5

Unit IDs

9WW4|1|BA|C|98
9WW4|1|BA|A2M|99
9WW4|1|BA|PSU|100
9WW4|1|BA|U|101
9WW4|1|BA|A|102
9WW4|1|BA|A|103
9WW4|1|BA|A|104
9WW4|1|BA|PSU|105
9WW4|1|BA|C|106
*
9WW4|1|BA|G|355
9WW4|1|BA|C|356
9WW4|1|BA|C|357
*
9WW4|1|BA|G|405
9WW4|1|BA|PSU|406
9WW4|1|BA|G|407
9WW4|1|BA|A|408
9WW4|1|BA|C|409
*
9WW4|1|BA|G|431
9WW4|1|BA|G|432

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain BB

40S ribosomal protein S4, X isoform

Chain BH

40S ribosomal protein S8

Chain BJ

40S ribosomal protein S11

Chain BQ

40S ribosomal protein S23