J4_9WW4_014
3D structure
- PDB id
- 9WW4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome non-rotated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.48 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 9WW4|1|BA|A|1083, 9WW4|1|BA|C|1085, 9WW4|1|BA|A|1087
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9WW4_014 not in the Motif Atlas
- Homologous match to J4_9H3G_014
- Geometric discrepancy: 0.0587
- The information below is about J4_9H3G_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.4
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-cWW-F
- Number of instances in this motif group
- 7
Unit IDs
9WW4|1|BA|A|671
9WW4|1|BA|A|672
9WW4|1|BA|G|673
*
9WW4|1|BA|C|1032
9WW4|1|BA|G|1033
9WW4|1|BA|A|1034
9WW4|1|BA|A|1035
9WW4|1|BA|A|1036
9WW4|1|BA|G|1037
*
9WW4|1|BA|C|1078
9WW4|1|BA|C|1079
9WW4|1|BA|A|1080
9WW4|1|BA|U|1081
9WW4|1|BA|A|1082
9WW4|1|BA|A|1083
9WW4|1|BA|A|1084
9WW4|1|BA|C|1085
9WW4|1|BA|G|1086
9WW4|1|BA|A|1087
9WW4|1|BA|U|1088
9WW4|1|BA|G|1089
*
9WW4|1|BA|U|1160
9WW4|1|BA|U|1161
Current chains
- Chain BA
- 18S rRNA (1740-MER)
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain Ap
- 60S ribosomal protein L41
- Chain Ar
- 60S ribosomal protein L37a
- Chain BJ
- 40S ribosomal protein S11
- Chain BQ
- 40S ribosomal protein S23
- Chain BR
- 40S ribosomal protein S26
- Chain BZ
- 40S ribosomal protein S13
- Chain Ba
- Small ribosomal subunit protein uS11
- Chain Bb
- 40S ribosomal protein S15a
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