J4_9WW5_006
3D structure
- PDB id
- 9WW5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome rotated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.69 Å
Loop
- Sequence
- UC*GGUCAG*UC*GGCCGUA
- Length
- 17 nucleotides
- Bulged bases
- 9WW5|1|AA|C|2437
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9WW5_006 not in the Motif Atlas
- Homologous match to J4_8GLP_006
- Geometric discrepancy: 0.0465
- The information below is about J4_8GLP_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_48150.2
- Basepair signature
- cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 9
Unit IDs
9WW5|1|AA|U|2409
9WW5|1|AA|C|2410
*
9WW5|1|AA|G|2434
9WW5|1|AA|G|2435
9WW5|1|AA|U|2436
9WW5|1|AA|C|2437
9WW5|1|AA|A|2438
9WW5|1|AA|G|2439
*
9WW5|1|AA|U|2538
9WW5|1|AA|C|2539
*
9WW5|1|AA|G|2777
9WW5|1|AA|G|2778
9WW5|1|AA|C|2779
9WW5|1|AA|C|2780
9WW5|1|AA|G|2781
9WW5|1|AA|U|2782
9WW5|1|AA|A|2783
Current chains
- Chain AA
- 28S rRNA (3773-MER)
Nearby chains
- Chain AC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AT
- 60S ribosomal protein L19
- Chain AZ
- 60S ribosomal protein L23a
- Chain Ai
- 60S ribosomal protein L34
- Chain Aj
- 60S ribosomal protein L35
- Chain Am
- 60S ribosomal protein L38
- Chain An
- 60S ribosomal protein L39
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