J4_9WW5_009

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAA(UY1)G

Length

21 nucleotides

Bulged bases

9WW5|1|AA|UY1|3818

QA status

Modified nucleotides: UY1

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9WW5_009 not in the Motif Atlas

Homologous match to J4_9H3G_008

Geometric discrepancy: 0.0742

The information below is about J4_9H3G_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.3

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

9WW5|1|AA|C|3696
9WW5|1|AA|U|3697
9WW5|1|AA|G|3698
*
9WW5|1|AA|C|3752
9WW5|1|AA|G|3753
*
9WW5|1|AA|C|3771
9WW5|1|AA|U|3772
9WW5|1|AA|U|3773
9WW5|1|AA|A|3774
9WW5|1|AA|A|3775
9WW5|1|AA|G|3776
9WW5|1|AA|G|3777
9WW5|1|AA|U|3778
9WW5|1|AA|A|3779
9WW5|1|AA|G|3780
*
9WW5|1|AA|U|3814
9WW5|1|AA|G|3815
9WW5|1|AA|A|3816
9WW5|1|AA|A|3817
9WW5|1|AA|UY1|3818
9WW5|1|AA|G|3819

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AD

60S ribosomal protein L8

Chain Ap

60S ribosomal protein L41

Chain BA

Small subunit ribosomal RNA; SSU rRNA