J4_9XFK_001

3D structure

PDB id

9XFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9XFK|1|I|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9XFK_001 not in the Motif Atlas

Homologous match to J4_7A0S_001

Geometric discrepancy: 0.2904

The information below is about J4_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.2

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

9XFK|1|I|C|268
9XFK|1|I|C|269
*
9XFK|1|I|G|370
9XFK|1|I|A|371
9XFK|1|I|G|372
9XFK|1|I|U|373
9XFK|1|I|A|374
9XFK|1|I|G|375
*
9XFK|1|I|U|399
9XFK|1|I|G|400
9XFK|1|I|A|401
9XFK|1|I|A|402
9XFK|1|I|U|403
9XFK|1|I|A|404
9XFK|1|I|U|405
9XFK|1|I|G|406
*
9XFK|1|I|C|421
9XFK|1|I|A|422
9XFK|1|I|A|423
9XFK|1|I|G|424

Current chains

Chain I

23S rRNA

Nearby chains

Chain P

50S ribosomal protein L9

Chain f

50S ribosomal protein L28