J4_9XFK_002

3D structure

PDB id

9XFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9XFK_002 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.1564

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

9XFK|1|I|G|297
9XFK|1|I|G|298
9XFK|1|I|A|299
9XFK|1|I|A|300
9XFK|1|I|G|301
*
9XFK|1|I|C|316
9XFK|1|I|G|317
9XFK|1|I|C|318
9XFK|1|I|G|319
*
9XFK|1|I|C|323
9XFK|1|I|A|324
9XFK|1|I|G|325
*
9XFK|1|I|C|337
9XFK|1|I|G|338
9XFK|1|I|U|339
9XFK|1|I|A|340
9XFK|1|I|C|341

Current chains

Chain I

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L4

Chain c

Large ribosomal subunit protein uL24