J4_9XFK_003

3D structure

PDB id

9XFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

9XFK|1|I|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9XFK|1|I|C|601
9XFK|1|I|A|602
9XFK|1|I|A|603
9XFK|1|I|G|604
*
9XFK|1|I|C|624
9XFK|1|I|G|625
9XFK|1|I|A|626
9XFK|1|I|A|627
9XFK|1|I|G|628
*
9XFK|1|I|C|635
9XFK|1|I|G|636
9XFK|1|I|A|637
9XFK|1|I|G|638
*
9XFK|1|I|C|650
9XFK|1|I|G|651
9XFK|1|I|U|652
9XFK|1|I|U|653
9XFK|1|I|A|654
9XFK|1|I|A|655
9XFK|1|I|G|656

Current chains

Chain I

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L4

Chain T

50S ribosomal protein L15

Chain l

50S ribosomal protein L35