J4_9XFK_006

3D structure

PDB id

9XFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

9XFK|1|I|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9XFK_006 not in the Motif Atlas

Homologous match to J4_7A0S_006

Geometric discrepancy: 0.2299

The information below is about J4_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.2

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

9

Unit IDs

9XFK|1|I|U|1313
9XFK|1|I|C|1314
*
9XFK|1|I|G|1338
9XFK|1|I|G|1339
9XFK|1|I|U|1340
9XFK|1|I|G|1341
9XFK|1|I|A|1342
9XFK|1|I|G|1343
*
9XFK|1|I|C|1404
9XFK|1|I|U|1405
*
9XFK|1|I|A|1597
9XFK|1|I|A|1598
9XFK|1|I|U|1599
9XFK|1|I|C|1600
9XFK|1|I|G|1601
9XFK|1|I|U|1602
9XFK|1|I|A|1603

Current chains

Chain I

23S rRNA

Nearby chains

Chain b

50S ribosomal protein L23