J4_9XFL_002

3D structure

PDB id

9XFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

In vitro structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9XFL_002 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.1041

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

9XFL|1|I|G|297
9XFL|1|I|G|298
9XFL|1|I|A|299
9XFL|1|I|A|300
9XFL|1|I|G|301
*
9XFL|1|I|C|316
9XFL|1|I|G|317
9XFL|1|I|C|318
9XFL|1|I|G|319
*
9XFL|1|I|C|323
9XFL|1|I|A|324
9XFL|1|I|G|325
*
9XFL|1|I|C|337
9XFL|1|I|G|338
9XFL|1|I|U|339
9XFL|1|I|A|340
9XFL|1|I|C|341

Current chains

Chain I

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L4

Chain c

Large ribosomal subunit protein uL24