J4_9XFL_008

3D structure

PDB id

9XFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

In vitro structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9XFL_008 not in the Motif Atlas

Homologous match to J4_7A0S_008

Geometric discrepancy: 0.0659

The information below is about J4_7A0S_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.6

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

9XFL|1|I|A|1772
9XFL|1|I|A|1773
9XFL|1|I|C|1774
9XFL|1|I|U|1775
9XFL|1|I|G|1776
*
9XFL|1|I|C|1788
9XFL|1|I|A|1789
9XFL|1|I|C|1790
9XFL|1|I|A|1791
9XFL|1|I|G|1792
*
9XFL|1|I|U|1827
9XFL|1|I|G|1828
9XFL|1|I|A|1829
9XFL|1|I|C|1830
*
9XFL|1|I|G|1975
9XFL|1|I|U|1976
9XFL|1|I|A|1977
9XFL|1|I|A|1978
9XFL|1|I|U|1979

Current chains

Chain I

23S rRNA

Nearby chains

Chain K

Large ribosomal subunit protein uL2