J4_9XTD_001

3D structure

PDB id

9XTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli delta lepA 30S ribosomal subunit class B, body domain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

9XTD|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9XTD_001 not in the Motif Atlas

Homologous match to J4_6CZR_027

Geometric discrepancy: 0.5888

The information below is about J4_6CZR_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.2

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

9XTD|1|A|G|115
9XTD|1|A|A|116
9XTD|1|A|G|117
9XTD|1|A|U|118
9XTD|1|A|A|119
9XTD|1|A|A|120
9XTD|1|A|U|121
9XTD|1|A|G|122
*
9XTD|1|A|U|239
9XTD|1|A|G|240
*
9XTD|1|A|C|286
9XTD|1|A|U|287
9XTD|1|A|A|288
9XTD|1|A|G|289
*
9XTD|1|A|C|311
9XTD|1|A|C|312

Current chains

Chain A

RNA (1128-MER)

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

Small ribosomal subunit protein uS17