J4_9XTD_002

3D structure

PDB id

9XTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli delta lepA 30S ribosomal subunit class B, body domain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

9XTD|1|A|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9XTD|1|A|G|142
9XTD|1|A|A|143
9XTD|1|A|G|144
*
9XTD|1|A|C|178
9XTD|1|A|A|179
9XTD|1|A|U|180
9XTD|1|A|A|181
9XTD|1|A|A|182
9XTD|1|A|C|183
9XTD|1|A|G|184
*
9XTD|1|A|C|193
9XTD|1|A|C|194
9XTD|1|A|A|195
9XTD|1|A|A|196
9XTD|1|A|A|197
9XTD|1|A|G|198
*
9XTD|1|A|U|219
9XTD|1|A|G|220
9XTD|1|A|C|221

Current chains

Chain A

RNA (1128-MER)

Nearby chains

Chain T

Small ribosomal subunit protein bS20