J4_9XWO_003

3D structure

PDB id

9XWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SecM-arrested 70S ribosome (short SecM)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

9XWO|1|A|C|183, 9XWO|1|A|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9XWO|1|A|G|142
9XWO|1|A|A|143
9XWO|1|A|G|144
*
9XWO|1|A|C|178
9XWO|1|A|A|179
9XWO|1|A|U|180
9XWO|1|A|A|181
9XWO|1|A|A|182
9XWO|1|A|C|183
9XWO|1|A|G|184
*
9XWO|1|A|C|193
9XWO|1|A|C|194
9XWO|1|A|A|195
9XWO|1|A|A|196
9XWO|1|A|A|197
9XWO|1|A|G|198
*
9XWO|1|A|U|219
9XWO|1|A|G|220
9XWO|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20