J4_9XWO_007

3D structure

PDB id

9XWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SecM-arrested 70S ribosome (short SecM)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9XWO|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9XWO_007 not in the Motif Atlas

Homologous match to J4_7A0S_001

Geometric discrepancy: 0.2427

The information below is about J4_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.3

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

9XWO|1|a|C|268
9XWO|1|a|C|269
*
9XWO|1|a|G|370
9XWO|1|a|A|371
9XWO|1|a|G|372
9XWO|1|a|U|373
9XWO|1|a|A|374
9XWO|1|a|G|375
*
9XWO|1|a|U|399
9XWO|1|a|G|400
9XWO|1|a|A|401
9XWO|1|a|A|402
9XWO|1|a|U|403
9XWO|1|a|A|404
9XWO|1|a|U|405
9XWO|1|a|G|406
*
9XWO|1|a|C|421
9XWO|1|a|A|422
9XWO|1|a|A|423
9XWO|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L9

Chain w

Large ribosomal subunit protein bL28