J4_9XWO_008

3D structure

PDB id

9XWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SecM-arrested 70S ribosome (short SecM)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9XWO_008 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.101

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

9XWO|1|a|G|297
9XWO|1|a|G|298
9XWO|1|a|A|299
9XWO|1|a|A|300
9XWO|1|a|G|301
*
9XWO|1|a|C|316
9XWO|1|a|G|317
9XWO|1|a|C|318
9XWO|1|a|G|319
*
9XWO|1|a|C|323
9XWO|1|a|A|324
9XWO|1|a|G|325
*
9XWO|1|a|C|337
9XWO|1|a|G|338
9XWO|1|a|U|339
9XWO|1|a|A|340
9XWO|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain t

50S ribosomal protein L24