J4_9XWO_009

3D structure

PDB id

9XWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SecM-arrested 70S ribosome (short SecM)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

9XWO|1|a|U|653, 9XWO|1|a|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9XWO|1|a|C|601
9XWO|1|a|A|602
9XWO|1|a|A|603
9XWO|1|a|G|604
*
9XWO|1|a|C|624
9XWO|1|a|G|625
9XWO|1|a|A|626
9XWO|1|a|A|627
9XWO|1|a|G|628
*
9XWO|1|a|C|635
9XWO|1|a|G|636
9XWO|1|a|A|637
9XWO|1|a|G|638
*
9XWO|1|a|C|650
9XWO|1|a|G|651
9XWO|1|a|U|652
9XWO|1|a|U|653
9XWO|1|a|A|654
9XWO|1|a|A|655
9XWO|1|a|G|656

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL35

Chain e

50S ribosomal protein L4

Chain k

50S ribosomal protein L15