J4_9XWO_012

3D structure

PDB id

9XWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SecM-arrested 70S ribosome (short SecM)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

9XWO|1|a|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9XWO_012 not in the Motif Atlas

Homologous match to J4_7A0S_006

Geometric discrepancy: 0.2371

The information below is about J4_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.2

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

9

Unit IDs

9XWO|1|a|U|1313
9XWO|1|a|C|1314
*
9XWO|1|a|G|1338
9XWO|1|a|G|1339
9XWO|1|a|U|1340
9XWO|1|a|G|1341
9XWO|1|a|A|1342
9XWO|1|a|G|1343
*
9XWO|1|a|C|1404
9XWO|1|a|U|1405
*
9XWO|1|a|A|1597
9XWO|1|a|A|1598
9XWO|1|a|U|1599
9XWO|1|a|C|1600
9XWO|1|a|G|1601
9XWO|1|a|U|1602
9XWO|1|a|A|1603

Current chains

Chain a

23S rRNA

Nearby chains

Chain s

Large ribosomal subunit protein uL23