J4_9Y4G_001

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

9Y4G|1|A5|C|216, 9Y4G|1|A5|C|217, 9Y4G|1|A5|A|218, 9Y4G|1|A5|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Y4G|1|A5|C|196
9Y4G|1|A5|A|197
9Y4G|1|A5|A|198
9Y4G|1|A5|G|199
*
9Y4G|1|A5|C|215
9Y4G|1|A5|C|216
9Y4G|1|A5|C|217
9Y4G|1|A5|A|218
9Y4G|1|A5|G|219
9Y4G|1|A5|C|220
9Y4G|1|A5|C|221
9Y4G|1|A5|C|222
*
9Y4G|1|A5|G|226
9Y4G|1|A5|A|227
9Y4G|1|A5|C|228
*
9Y4G|1|A5|G|240
9Y4G|1|A5|G|241
9Y4G|1|A5|U|242
9Y4G|1|A5|A|243
9Y4G|1|A5|G|244

Current chains

Chain A5

LSU-alpha rRNA

Nearby chains

Chain CC

60S ribosomal protein L4

Chain CY

60S ribosomal protein L26