J4_9Y4G_006

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUG*CG*CUUAAGGUAGC*GCAUGAAUG

Length

25 nucleotides

Bulged bases

9Y4G|1|A6|U|3818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Y4G|1|A6|C|3696
9Y4G|1|A6|U|3697
9Y4G|1|A6|G|3698
*
9Y4G|1|A6|C|3752
9Y4G|1|A6|G|3753
*
9Y4G|1|A6|C|3771
9Y4G|1|A6|U|3772
9Y4G|1|A6|U|3773
9Y4G|1|A6|A|3774
9Y4G|1|A6|A|3775
9Y4G|1|A6|G|3776
9Y4G|1|A6|G|3777
9Y4G|1|A6|U|3778
9Y4G|1|A6|A|3779
9Y4G|1|A6|G|3780
9Y4G|1|A6|C|3781
*
9Y4G|1|A6|G|3811
9Y4G|1|A6|C|3812
9Y4G|1|A6|A|3813
9Y4G|1|A6|U|3814
9Y4G|1|A6|G|3815
9Y4G|1|A6|A|3816
9Y4G|1|A6|A|3817
9Y4G|1|A6|U|3818
9Y4G|1|A6|G|3819

Current chains

Chain A6

LSU-beta rRNA (2108-MER)

Nearby chains

Chain B2

Small subunit ribosomal RNA; SSU rRNA

Chain Bb

Transfer RNA; tRNA

Chain CA

60S ribosomal protein L8

Chain Cc

Transfer RNA; tRNA

Chain Cn

60S ribosomal protein L41