J4_9Y4G_011

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUGG*CGU*AAGGUCG*CC

Length

16 nucleotides

Bulged bases

9Y4G|1|Cc|U|8, 9Y4G|1|Cc|U|48, 9Y4G|1|Cc|C|49

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9Y4G_011 not in the Motif Atlas

Homologous match to J4_7MRL_001

Geometric discrepancy: 0.2152

The information below is about J4_7MRL_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_95067.1

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

48

Unit IDs

9Y4G|1|Cc|G|7
9Y4G|1|Cc|U|8
9Y4G|1|Cc|G|9
9Y4G|1|Cc|G|10
*
9Y4G|1|Cc|C|26
9Y4G|1|Cc|G|27
9Y4G|1|Cc|U|28
*
9Y4G|1|Cc|A|44
9Y4G|1|Cc|A|45
9Y4G|1|Cc|G|46
9Y4G|1|Cc|G|47
9Y4G|1|Cc|U|48
9Y4G|1|Cc|C|49
9Y4G|1|Cc|G|50
*
9Y4G|1|Cc|C|66
9Y4G|1|Cc|C|67

Current chains

Chain Cc

tRNA (78-MER)

Nearby chains

Chain A6

Large subunit ribosomal RNA; LSU rRNA

Chain B2

Small subunit ribosomal RNA; SSU rRNA

Chain Co

60S ribosomal protein L36a