J4_9YDB_002

3D structure

PDB id

9YDB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic pre-60S ribosomes from uL16 P-site loop mutants in bypass condition. Lsg1,Nmd3 and Tif6 present

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

CUAUG*CGUC*GAG*CGUGUG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YDB|1|A|C|185
9YDB|1|A|U|186
9YDB|1|A|A|187
9YDB|1|A|U|188
9YDB|1|A|G|189
*
9YDB|1|A|C|205
9YDB|1|A|G|206
9YDB|1|A|U|207
9YDB|1|A|C|208
*
9YDB|1|A|G|212
9YDB|1|A|A|213
9YDB|1|A|G|214
*
9YDB|1|A|C|226
9YDB|1|A|G|227
9YDB|1|A|U|228
9YDB|1|A|G|229
9YDB|1|A|U|230
9YDB|1|A|G|231

Current chains

Chain A

25S RNA

Nearby chains

Chain C

5.8S ribosomal RNA; 5.8S rRNA

Chain LF

60S ribosomal protein L4-A

Chain La

60S ribosomal protein L26-A