J4_9YDB_006

3D structure

PDB id

9YDB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic pre-60S ribosomes from uL16 P-site loop mutants in bypass condition. Lsg1,Nmd3 and Tif6 present

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

GACUG*CAUAG*UGAUU*AUUAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YDB|1|A|G|2130
9YDB|1|A|A|2131
9YDB|1|A|C|2132
9YDB|1|A|U|2133
9YDB|1|A|G|2134
*
9YDB|1|A|C|2146
9YDB|1|A|A|2147
9YDB|1|A|U|2148
9YDB|1|A|A|2149
9YDB|1|A|G|2150
*
9YDB|1|A|U|2186
9YDB|1|A|G|2187
9YDB|1|A|A|2188
9YDB|1|A|U|2189
9YDB|1|A|U|2190
*
9YDB|1|A|A|2317
9YDB|1|A|U|2318
9YDB|1|A|U|2319
9YDB|1|A|A|2320
9YDB|1|A|A|2321
9YDB|1|A|C|2322

Current chains

Chain A

25S RNA

Nearby chains

Chain LD

60S ribosomal protein L2-A

Chain Lr

60S ribosomal protein L43-A