J4_9YDB_007
3D structure
- PDB id
- 9YDB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic pre-60S ribosomes from uL16 P-site loop mutants in bypass condition. Lsg1,Nmd3 and Tif6 present
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 9YDB|1|A|U|2269, 9YDB|1|A|U|2314
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YDB|1|A|C|2192
9YDB|1|A|U|2193
9YDB|1|A|G|2194
*
9YDB|1|A|C|2248
9YDB|1|A|G|2249
*
9YDB|1|A|C|2267
9YDB|1|A|U|2268
9YDB|1|A|U|2269
9YDB|1|A|A|2270
9YDB|1|A|A|2271
9YDB|1|A|G|2272
9YDB|1|A|G|2273
9YDB|1|A|U|2274
9YDB|1|A|A|2275
9YDB|1|A|G|2276
*
9YDB|1|A|U|2310
9YDB|1|A|G|2311
9YDB|1|A|A|2312
9YDB|1|A|A|2313
9YDB|1|A|U|2314
9YDB|1|A|G|2315
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LD
- 60S ribosomal protein L2-A
- Chain V
- 60S ribosomal export protein NMD3
- Chain W
- Large subunit GTPase 1
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