J4_9YDB_008
3D structure
- PDB id
- 9YDB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic pre-60S ribosomes from uL16 P-site loop mutants in bypass condition. Lsg1,Nmd3 and Tif6 present
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- CUAAG*UUGAU*ACC*GUG
- Length
- 16 nucleotides
- Bulged bases
- 9YDB|1|A|A|2657
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YDB|1|A|C|2654
9YDB|1|A|U|2655
9YDB|1|A|A|2656
9YDB|1|A|A|2657
9YDB|1|A|G|2658
*
9YDB|1|A|U|2712
9YDB|1|A|U|2713
9YDB|1|A|G|2714
9YDB|1|A|A|2715
9YDB|1|A|U|2716
*
9YDB|1|A|A|2740
9YDB|1|A|C|2741
9YDB|1|A|C|2742
*
9YDB|1|A|G|2751
9YDB|1|A|U|2752
9YDB|1|A|G|2753
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LG
- 60S ribosomal protein L5
- Chain LV
- 60S ribosomal protein L21-A
- Chain Ld
- 60S ribosomal protein L29
- Chain Lq
- 60S ribosomal protein L42-A
- Chain V
- 60S ribosomal export protein NMD3
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