J4_9YDC_001
3D structure
- PDB id
- 9YDC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/P, P/E tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.02 Å
Loop
- Sequence
- UC*GAGUCG*CUAAGUG*UAAA
- Length
- 19 nucleotides
- Bulged bases
- 9YDC|1|A|U|298
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9YDC_001 not in the Motif Atlas
- Homologous match to J4_9PN5_001
- Geometric discrepancy: 0.0779
- The information below is about J4_9PN5_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_94698.4
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
- Number of instances in this motif group
- 12
Unit IDs
9YDC|1|A|U|112
9YDC|1|A|C|113
*
9YDC|1|A|G|267
9YDC|1|A|A|268
9YDC|1|A|G|269
9YDC|1|A|U|270
9YDC|1|A|C|271
9YDC|1|A|G|272
*
9YDC|1|A|C|293
9YDC|1|A|U|294
9YDC|1|A|A|295
9YDC|1|A|A|296
9YDC|1|A|G|297
9YDC|1|A|U|298
9YDC|1|A|G|299
*
9YDC|1|A|U|316
9YDC|1|A|A|317
9YDC|1|A|A|318
9YDC|1|A|A|319
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LN
- 60S ribosomal protein L13-A
- Chain LP
- 60S ribosomal protein L15-A
- Chain Lj
- 60S ribosomal protein L35-A
- Chain Lk
- 60S ribosomal protein L36-A
Coloring options: