J4_9YDD_006
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- GACUG*CAUAG*UGAUU*AUUAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9YDD_006 not in the Motif Atlas
- Homologous match to J4_9PN5_006
- Geometric discrepancy: 0.0534
- The information below is about J4_9PN5_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78485.4
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 8
Unit IDs
9YDD|1|A|G|2130
9YDD|1|A|A|2131
9YDD|1|A|C|2132
9YDD|1|A|U|2133
9YDD|1|A|G|2134
*
9YDD|1|A|C|2146
9YDD|1|A|A|2147
9YDD|1|A|U|2148
9YDD|1|A|A|2149
9YDD|1|A|G|2150
*
9YDD|1|A|U|2186
9YDD|1|A|G|2187
9YDD|1|A|A|2188
9YDD|1|A|U|2189
9YDD|1|A|U|2190
*
9YDD|1|A|A|2317
9YDD|1|A|U|2318
9YDD|1|A|U|2319
9YDD|1|A|A|2320
9YDD|1|A|A|2321
9YDD|1|A|C|2322
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain E
- Small subunit ribosomal RNA; SSU rRNA
- Chain LD
- 60S ribosomal protein L2-A
- Chain Lp
- 60S ribosomal protein L41-A
- Chain Lr
- 60S ribosomal protein L43-A
Coloring options: