J4_9YDD_010
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- CAUUAAAUC*GCC*GUAAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 9YDD|1|E|A|359
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9YDD_010 not in the Motif Atlas
- Homologous match to J4_9PN5_010
- Geometric discrepancy: 0.0721
- The information below is about J4_9PN5_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_15241.5
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
9YDD|1|E|C|99
9YDD|1|E|A|100
9YDD|1|E|U|101
9YDD|1|E|U|102
9YDD|1|E|A|103
9YDD|1|E|A|104
9YDD|1|E|A|105
9YDD|1|E|U|106
9YDD|1|E|C|107
*
9YDD|1|E|G|307
9YDD|1|E|C|308
9YDD|1|E|C|309
*
9YDD|1|E|G|357
9YDD|1|E|U|358
9YDD|1|E|A|359
9YDD|1|E|A|360
9YDD|1|E|C|361
*
9YDD|1|E|G|383
9YDD|1|E|G|384
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain SS
- 40S ribosomal protein S4-A
- Chain SV
- 40S ribosomal protein S8-A
- Chain SX
- 40S ribosomal protein S11-A
- Chain Sc
- 40S ribosomal protein S23-A
Coloring options: