J4_9YDD_011
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACUAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 9YDD|1|E|A|623, 9YDD|1|E|A|1026, 9YDD|1|E|C|1028, 9YDD|1|E|U|1029, 9YDD|1|E|A|1030, 9YDD|1|E|U|1031
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9YDD_011 not in the Motif Atlas
- Homologous match to J4_9SUM_012
- Geometric discrepancy: 0.0713
- The information below is about J4_9SUM_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.4
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-cWW-F
- Number of instances in this motif group
- 7
Unit IDs
9YDD|1|E|A|622
9YDD|1|E|A|623
9YDD|1|E|G|624
*
9YDD|1|E|C|975
9YDD|1|E|G|976
9YDD|1|E|A|977
9YDD|1|E|A|978
9YDD|1|E|A|979
9YDD|1|E|G|980
*
9YDD|1|E|C|1021
9YDD|1|E|C|1022
9YDD|1|E|A|1023
9YDD|1|E|U|1024
9YDD|1|E|A|1025
9YDD|1|E|A|1026
9YDD|1|E|A|1027
9YDD|1|E|C|1028
9YDD|1|E|U|1029
9YDD|1|E|A|1030
9YDD|1|E|U|1031
9YDD|1|E|G|1032
*
9YDD|1|E|U|1103
9YDD|1|E|U|1104
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain Lp
- 60S ribosomal protein L41-A
- Chain SX
- 40S ribosomal protein S11-A
- Chain SY
- 40S ribosomal protein S13
- Chain SZ
- 40S ribosomal protein S14-B
- Chain Sb
- 40S ribosomal protein S22-A
- Chain Sc
- 40S ribosomal protein S23-A
- Chain Se
- Small ribosomal subunit protein eS26B
Coloring options: