J4_9YPO_006
3D structure
- PDB id
- 9YPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIa
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CAAAUAU*AGG*CAUGUU*AG
- Length
- 18 nucleotides
- Bulged bases
- 9YPO|1|5|A|2366, 9YPO|1|5|U|2369, 9YPO|1|5|U|2828
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YPO|1|5|C|2365
9YPO|1|5|A|2366
9YPO|1|5|A|2367
9YPO|1|5|A|2368
9YPO|1|5|U|2369
9YPO|1|5|A|2370
9YPO|1|5|U|2371
*
9YPO|1|5|A|2389
9YPO|1|5|G|2390
9YPO|1|5|G|2391
*
9YPO|1|5|C|2824
9YPO|1|5|A|2825
9YPO|1|5|U|2826
9YPO|1|5|G|2827
9YPO|1|5|U|2828
9YPO|1|5|U|2829
*
9YPO|1|5|A|3856
9YPO|1|5|G|3857
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain P
- Large ribosomal subunit protein uL22
- Chain R
- Ribosomal protein L19
- Chain d
- eL31
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