J4_9YPO_010
3D structure
- PDB id
- 9YPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIa
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 9YPO|1|5|U|3818
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YPO|1|5|C|3696
9YPO|1|5|U|3697
9YPO|1|5|G|3698
*
9YPO|1|5|C|3752
9YPO|1|5|G|3753
*
9YPO|1|5|C|3771
9YPO|1|5|U|3772
9YPO|1|5|U|3773
9YPO|1|5|A|3774
9YPO|1|5|A|3775
9YPO|1|5|G|3776
9YPO|1|5|G|3777
9YPO|1|5|U|3778
9YPO|1|5|A|3779
9YPO|1|5|G|3780
*
9YPO|1|5|U|3814
9YPO|1|5|G|3815
9YPO|1|5|A|3816
9YPO|1|5|A|3817
9YPO|1|5|U|3818
9YPO|1|5|G|3819
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 13
- Transfer RNA; tRNA
- Chain 9
- Small subunit ribosomal RNA; SSU rRNA
- Chain A
- Ribosomal protein L8
- Chain n
- eL41
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